2RMA Isomerase Immunosuppressant date Jan 07, 1994
title Crystal Structures Of Cyclophilin A Complexed With Cyclospor N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine Cyclospori
authors H.Ke, D.Mayrose
compound source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase
Chain: A, C, E, G, I, K, M, O, Q, S
Synonym: Ppiase, Rotamase, Cyclophilin A
Ec: 5.2.1.8
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Gene: Cyclophilin A

Molecule: Cyclosporin A
Chain: B, D, F, H, J, L, N, P, R, T
Synonym: Ciclosporin, Ciclosporine
Engineered: Yes

Synthetic: Yes
Organism_scientific: Tolypocladium Inflatum
Organism_taxid: 29910
symmetry Space Group: P 1 21 1
R_factor 0.170 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.600 160.900 95.300 90.00 90.60 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand ABA, BMT, DAL, MLE, MVA, SAR enzyme Isomerase E.C.5.2.1.8 BRENDA
related structures by homologous chain: 1CWA, 2RMB
Gene
Ontology
ChainFunctionProcessComponent
S, A, O, K, E, Q, M, C, I, G


Primary referenceCrystal structures of cyclophilin A complexed with cyclosporin A and N-methyl-4-[(E)-2-butenyl]-4,4-dimethylthreonine cyclosporin A., Ke H, Mayrose D, Belshaw PJ, Alberg DG, Schreiber SL, Chang ZY, Etzkorn FA, Ho S, Walsh CT, Structure 1994 Jan 15;2(1):33-44. PMID:8075981
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (373 Kb) [Save to disk]
  • Biological Unit Coordinates (2rma.pdb1.gz) 362 Kb
  • LPC: Ligand-Protein Contacts for 2RMA
  • CSU: Contacts of Structural Units for 2RMA
  • Likely Quarternary Molecular Structure file(s) for 2RMA
  • Retrieve 2RMA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RMA from S2C, [Save to disk]
  • View 2RMA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RMA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RMA, from MSDmotif at EBI
  • Genome occurence of 2RMA's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2rmaa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d2rmac_, region C [Jmol] [rasmolscript] [script source]
        - Domain d2rmae_, region E [Jmol] [rasmolscript] [script source]
        - Domain d2rmag_, region G [Jmol] [rasmolscript] [script source]
        - Domain d2rmai_, region I [Jmol] [rasmolscript] [script source]
        - Domain d2rmak_, region K [Jmol] [rasmolscript] [script source]
        - Domain d2rmam_, region M [Jmol] [rasmolscript] [script source]
        - Domain d2rmao_, region O [Jmol] [rasmolscript] [script source]
        - Domain d2rmaq_, region Q [Jmol] [rasmolscript] [script source]
        - Domain d2rmas_, region S [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rma] [2rma_C] [2rma_N] [2rma_K] [2rma_F] [2rma_S] [2rma_H] [2rma_I] [2rma_B] [2rma_A] [2rma_M] [2rma_T] [2rma_L] [2rma_D] [2rma_Q] [2rma_E] [2rma_J] [2rma_G] [2rma_P] [2rma_O] [2rma_R]
  • SWISS-PROT database: [P62937]
  • Domain organization of [PPIA_HUMAN] by SWISSPFAM
  • Other resources with information on 2RMA
  • Community annotation for 2RMA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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