2RNL Signaling Protein date Jan 11, 2008
title Solution Structure Of The Egf-Like Domain From Human Amphiregulin
authors X.Qin, F.Hayashi, T.Terada, M.Shirouzu, S.Watanabe, T.Kigawa, N.Yabuta, H.Nojima, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Amphiregulin
Chain: A
Fragment: Egf-Like Domain
Synonym: Ar, Colorectum Cell-Derived Growth Factor, Crdgf
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Areg, Sdgf
Expression_system: Cell-Free Protein Synthesis
Expression_system_vector_type: Vector
Expression_system_vector: P061201-18
Other_details: E. Coli Cell-Free
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (247 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2RNL
  • Retrieve 2RNL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RNL from S2C, [Save to disk]
  • View 2RNL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RNL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2RNL, from MSDmotif at EBI
  • Fold representative 2rnl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rnl] [2rnl_A]
  • SWISS-PROT database: [P15514]
  • Domain organization of [AREG_HUMAN] by SWISSPFAM
  • Domain found in 2RNL: [EGF ] by SMART
  • Other resources with information on 2RNL
  • Community annotation for 2RNL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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