2RNM Protein Fibril date Jan 24, 2008
title Structure Of The Het-S(218-289) Prion In Its Amyloid Form Ob Solid-State Nmr
authors C.Wasmer, A.Lange, H.Van Melckebeke, A.Siemer, R.Riek, B.H.Meier
compound source
Molecule: Small S Protein
Chain: A, B, C, D, E
Fragment: C-Terminal Prion Forming Domain, Unp Residues 218
Synonym: Het-S
Engineered: Yes
Organism_scientific: Podospora Anserina
Organism_common: Fungi
Organism_taxid: 5145
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector: Plasmid
Expression_system_plasmid: Pet-24a
methodSolution NMR
note 2RNM (Molecule of the Month:pdb101)
Primary referenceAmyloid fibrils of the HET-s(218-289) prion form a beta solenoid with a triangular hydrophobic core., Wasmer C, Lange A, Van Melckebeke H, Siemer AB, Riek R, Meier BH, Science. 2008 Mar 14;319(5869):1523-6. PMID:18339938
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2378 Kb) [Save to disk]
  • Biological Unit Coordinates (2rnm.pdb1.gz) 120 Kb
  • CSU: Contacts of Structural Units for 2RNM
  • Original NMR restraints for 2RNM from PDB
  • Retrieve 2RNM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RNM from S2C, [Save to disk]
  • View 2RNM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RNM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2RNM, from MSDmotif at EBI
  • Fold representative 2rnm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rnm_C] [2rnm_B] [2rnm_A] [2rnm_D] [2rnm_E] [2rnm]
  • SWISS-PROT database: [Q03689]
  • Belongs to the heterokaryon incompatibility prion/amyloid protein (het-s) family according to TCDB.
  • Domain organization of [Q03689_PODAN] by SWISSPFAM
  • Other resources with information on 2RNM
  • Community annotation for 2RNM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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