2RNR Transcription date Jan 31, 2008
title Solution Structure Of The Complex Between Tfiie Alpha C-Term Acidic Domain And Tfiih P62 Ph Domain
authors M.Okuda, Y.Nishimura
compound source
Molecule: Transcription Initiation Factor Iie Subunit Alpha
Chain: A
Fragment: C-Terminal Acidic Domain, Unp Residues 378-439
Synonym: Tfiie-Alpha, General Transcription Factor Iie Subu General Transcription Factor Iie 56 Kda Subunit;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pet3a

Molecule: Tfiih Basal Transcription Factor Complex P62 Subu
Chain: B
Fragment: Ph Domain, Unp Residues 1-108
Synonym: Basic Transcription Factor 2 62 Kda Subunit, Btf2- General Transcription Factor Iih Polypeptide 1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pgex4t-1
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceStructural insight into the TFIIE-TFIIH interaction: TFIIE and p53 share the binding region on TFIIH., Okuda M, Tanaka A, Satoh M, Mizuta S, Takazawa M, Ohkuma Y, Nishimura Y, EMBO J. 2008 Mar 20;. PMID:18354501
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (907 Kb) [Save to disk]
  • Biological Unit Coordinates (2rnr.pdb1.gz) 45 Kb
  • CSU: Contacts of Structural Units for 2RNR
  • Original NMR restraints for 2RNR from PDB
  • Retrieve 2RNR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RNR from S2C, [Save to disk]
  • View 2RNR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RNR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RNR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rnr_A] [2rnr_B] [2rnr]
  • SWISS-PROT database: [P29083] [P32780]
  • Domain organization of [T2EA_HUMAN] [TF2H1_HUMAN] by SWISSPFAM
  • Other resources with information on 2RNR
  • Community annotation for 2RNR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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