2RO1	Transcription	date	Mar 04, 2008
title	Nmr Solution Structures Of Human Kap1 Phd Finger-Bromodomain
authors	L.Zeng, K.L.Yap, A.V.Ivanov, X.Wang, S.Mujtaba, O.Plotnikova, F.J.
compound		source
Molecule: Transcription Intermediary Factor 1-Beta Chain: A Fragment: Unp Residues 624-812 Synonym: Tif1-Beta, Tripartite Motif-Containing Protein 28, Corepressor Kap-1, Krab-Associated Protein 1, Kap-1, Krab-I Protein 1, Krip-1, Ring Finger Protein 96; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Gene: Trim28, Kap1, Rnf96, Tif1b Expression_system: Escherichia Coli Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_vector: Pet15b
method	Solution NMR
ligand	ZN	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structural insights into human KAP1 PHD finger-bromodomain and its role in gene silencing., Zeng L, Yap KL, Ivanov AV, Wang X, Mujtaba S, Plotnikova O, Rauscher FJ 3rd, Zhou MM, Nat Struct Mol Biol. 2008 Jun;15(6):626-33. Epub 2008 May 18. PMID:18488044

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (972 Kb) [Save to disk] Biological Unit Coordinates (2ro1.pdb1.gz) 48 Kb LPC: Ligand-Protein Contacts for 2RO1 CSU: Contacts of Structural Units for 2RO1 Original NMR restraints for 2RO1 from PDB Retrieve 2RO1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2RO1 from S2C, [Save to disk]

View 2RO1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2RO1

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2RO1, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ro1] [2ro1_A] SWISS-PROT database: [Q13263] Domain organization of [TIF1B_HUMAN] by SWISSPFAM Domains found in 2RO1: [BROMO] [PHD ] by SMART

Other resources with information on 2RO1

Community annotation for 2RO1 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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