2ROP Hydrolase date Apr 04, 2008
title Solution Structure Of Domains 3 And 4 Of Human Atp7b
authors L.Banci, I.Bertini, F.Cantini, A.C.Rosenzweig, L.A.Yatsunyk
compound source
Molecule: Copper-Transporting Atpase 2
Chain: A
Fragment: Hma 3 And Hma 4, Third Soluble Domain And Fourth Soluble Domain;
Synonym: Copper Pump 2, Wilson Disease-Associated Protein, Wnd140 Kda;
Ec: 3.6.3.4
Engineered: Yes
Other_details: The Construct Used In The Experiment Is 202 Aa Long And Contains The Soluble Domains 3 And 4 Of Atp7b Named Also Wilson Protein, The Inter-Domain Linker (31 Aa), A 17 Aa Portion Of The Linker Connecting Domains 2-3, A 12 Aa Portion Of The Linker Connecting Domains 4-5, And No Tags.
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Atp7b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet32xalic
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.6.3.4 BRENDA
Primary referenceMetal binding domains 3 and 4 of the Wilson disease protein: solution structure and interaction with the copper(I) chaperone HAH1., Banci L, Bertini I, Cantini F, Rosenzweig AC, Yatsunyk LA, Biochemistry. 2008 Jul 15;47(28):7423-9. Epub 2008 Jun 18. PMID:18558714
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (714 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2ROP
  • Original NMR restraints for 2ROP from PDB
  • Retrieve 2ROP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ROP from S2C, [Save to disk]
  • View 2ROP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ROP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2ROP, from MSDmotif at EBI
  • Fold representative 2rop from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rop_A] [2rop]
  • SWISS-PROT database: [P35670]
  • Belongs to the p-type atpase (p-atpase) superfamily according to TCDB.
  • Domain organization of [ATP7B_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2ROP with the sequences similar proteins can be viewed for 2ROP's classification [ATP7B_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ATP7B_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2ROP
  • Community annotation for 2ROP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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