2ROR Signaling Protein date Apr 08, 2008
title Solution Structure Of The Vav1 Sh2 Domain Complexed With A Tyrosine-Phosphorylated Peptide From Slp76
authors M.Tanaka, T.Kasai, S.Koshiba, T.Kigawa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Proto-Oncogene Vav
Chain: A
Fragment: Sh2 Domain, Unp Residues 629-775
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vav1
Expression_system: Cell-Free Synthesis
Expression_system_vector_type: Vector
Expression_system_vector: P040517-08
Other_details: E. Coli Cell Free

Molecule: 15-Meric Peptide From Lymphocyte Cytosolic Protein 2;
Chain: B
Synonym: Sh2 Domain-Containing Leukocyte Protein Of 76 Kda, Slp-76 Tyrosine Phosphoprotein, Slp76;
Engineered: Yes
Other_details: Tyrosine Phosphorylation Site

Synthetic: Yes
Other_details: Chemical Synthesis
methodSolution NMR
ligand PTR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (799 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2ROR
  • CSU: Contacts of Structural Units for 2ROR
  • Original NMR restraints for 2ROR from PDB
  • Retrieve 2ROR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ROR from S2C, [Save to disk]
  • View 2ROR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ROR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2ROR, from MSDmotif at EBI
  • Fold representative 2ror from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ror] [2ror_A] [2ror_B]
  • SWISS-PROT database: [Q13094] [P15498]
  • Domain organization of [LCP2_HUMAN] [VAV_HUMAN] by SWISSPFAM
  • Domain found in 2ROR: [SH2 ] by SMART
  • Other resources with information on 2ROR
  • Community annotation for 2ROR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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