2ROX Transport date Oct 23, 1996
title Transthyretin (Also Called Prealbumin) Complex With Thyroxine (T4)
authors A.Wojtczak, V.Cody, J.R.Luft, W.Pangborn
compound source
Molecule: Transthyretin
Chain: A, B
Synonym: Prealbumin
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Plasma
Tissue: Plasma
symmetry Space Group: P 21 21 2
R_factor 0.170 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.410 85.992 65.552 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand SO4, T44 BindingDB enzyme
note 2ROX supersedes 1ROX
related structures by homologous chain: 1BMZ, 2TRH
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • hormone activity


  • Primary referenceStructures of human transthyretin complexed with thyroxine at 2.0 A resolution and 3',5'-dinitro-N-acetyl-L-thyronine at 2.2 A resolution., Wojtczak A, Cody V, Luft JR, Pangborn W, Acta Crystallogr D Biol Crystallogr. 1996 Jul 1;52(Pt 4):758-65. PMID:15299640
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (2rox.pdb1.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 2ROX
  • CSU: Contacts of Structural Units for 2ROX
  • Likely Quarternary Molecular Structure file(s) for 2ROX
  • Retrieve 2ROX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ROX from S2C, [Save to disk]
  • View 2ROX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ROX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2ROX, from MSDmotif at EBI
  • Genome occurence of 2ROX's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2roxa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d2roxb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 2rox from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rox] [2rox_B] [2rox_A]
  • SWISS-PROT database: [P02766]
  • Domain organization of [TTHY_HUMAN] by SWISSPFAM
  • Domain found in 2ROX: [TR_THY ] by SMART
  • Other resources with information on 2ROX
  • Community annotation for 2ROX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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