2RPC Transcription date May 14, 2008
title Solution Structure Of The Tandem Zf-C2h2 Domains From The Human Zinc Finger Protein Zic 3
authors T.Tomizawa, T.Kigawa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Zinc Finger Protein Zic 3
Chain: A
Fragment: C2h2 Domains, Unp Residues 245-386
Synonym: Zinc Finger Protein Of The Cerebellum 3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Zic3
Expression_system: Cell Free System
Expression_system_vector_type: Vector
Expression_system_vector: P071029-02
methodSolution NMR
ligand ZN enzyme
Primary referenceFunctional and structural basis of the nuclear localization signal in the ZIC3 zinc finger domain., Hatayama M, Tomizawa T, Sakai-Kato K, Bouvagnet P, Kose S, Imamoto N, Yokoyama S, Utsunomiya-Tate N, Mikoshiba K, Kigawa T, Aruga J, Hum Mol Genet. 2008 Nov 15;17(22):3459-73. Epub 2008 Aug 20. PMID:18716025
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (822 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2RPC
  • CSU: Contacts of Structural Units for 2RPC
  • Original NMR restraints for 2RPC from PDB
  • Retrieve 2RPC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RPC from S2C, [Save to disk]
  • View 2RPC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RPC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2RPC, from MSDmotif at EBI
  • Fold representative 2rpc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rpc] [2rpc_A]
  • SWISS-PROT database: [O60481]
  • Domain organization of [ZIC3_HUMAN] by SWISSPFAM
  • Domain found in 2RPC: [ZnF_C2H2 ] by SMART
  • Alignments of the sequence of 2RPC with the sequences similar proteins can be viewed for 2RPC's classification [ZIC3_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ZIC3_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2RPC
  • Community annotation for 2RPC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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