2RQB Hydrolase date Mar 17, 2009
title Solution Structure Of Mda5 Ctd
authors K.Takahasi, H.Kumeta, N.Tsuduki, R.Narita, T.Shigemoto, R.Hirai, M.Yoneyama, M.Horiuchi, K.Ogura, T.Fujita, I.Fuyuhiko
compound source
Molecule: Interferon-Induced Helicase C Domain-Containing Protein 1;
Chain: A
Fragment: Unp Residues 896-1025
Synonym: Interferon-Induced With Helicase C Domain Protein 1, Helicase With 2 Card Domains, Helicard, Melanoma Differentiation-Associated Protein 5, Mda-5, Rna Helicase- Dead Box Protein 116, Murabutide Down-Regulated Protein;
Ec: 3.6.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ifih1, Mda5, Rh116
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1
methodSolution NMR
ligand ZN enzyme Hydrolase E.C.3.6.1 BRENDA
Primary referenceSolution structures of cytosolic RNA sensors MDA5 and LGP2 C-terminal domains: Identification of the RNA recognition loop in RIG-I like receptors., Takahasi K, Kumeta H, Tsuduki N, Narita R, Shigemoto T, Hirai R, Yoneyama M, Horiuchi M, Ogura K, Fujita T, Inagaki F, J Biol Chem. 2009 Apr 20. PMID:19380577
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (855 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2RQB
  • CSU: Contacts of Structural Units for 2RQB
  • Original NMR restraints for 2RQB from PDB
  • Retrieve 2RQB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RQB from S2C, [Save to disk]
  • View 2RQB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RQB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2RQB, from MSDmotif at EBI
  • Fold representative 2rqb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rqb] [2rqb_A]
  • SWISS-PROT database: [Q9BYX4]
  • Domain organization of [IFIH1_HUMAN] by SWISSPFAM
  • Other resources with information on 2RQB
  • Community annotation for 2RQB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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