2RQC Transcription Rna date Apr 09, 2009
title Solution Structure Of Rna-Binding Domain 3 Of Cugbp1 In Comp Rna (Ug)3
authors K.Tsuda, K.Kuwasako, M.Takahashi, T.Someya, Y.Muto, M.Inoue, T.Kig T.Terada, M.Shirouzu, S.Yokoyama, Riken Structural Genomicspr Initiative (Rsgi)
compound source
Molecule: Cug-Bp- And Etr-3-Like Factor 1
Chain: A
Fragment: Rna Recognition Motif, Residues 383-484
Synonym: Celf-1, Bruno-Like Protein 2, Rna-Binding Protein Cug Triplet Repeat Rna-Binding Protein 1, Cug-Bp1, Deadenyl Factor Cug-Bp, 50 Kda Nuclear Polyadenylated Rna-Binding Pr Embryo Deadenylation Element-Binding Protein Homolog, Eden- Homolog;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cugbp1
Expression_system: Free Protein Synthesis
Expression_system_vector_type: Vector
Expression_system_vector: P040329-21
Other_details: E. Coli - Cell-Free Protein Synthesis

Molecule: 5'-R(Upgpupgpupg)-3'
Chain: B
Engineered: Yes

Synthetic: Yes
Other_details: Rna Was Prepared By In Vitro Transcription
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for the sequence-specific RNA-recognition mechanism of human CUG-BP1 RRM3., Tsuda K, Kuwasako K, Takahashi M, Someya T, Inoue M, Terada T, Kobayashi N, Shirouzu M, Kigawa T, Tanaka A, Sugano S, Guntert P, Muto Y, Yokoyama S, Nucleic Acids Res. 2009 Jun 24. PMID:19553194
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (639 Kb) [Save to disk]
  • Biological Unit Coordinates (2rqc.pdb1.gz) 32 Kb
  • CSU: Contacts of Structural Units for 2RQC
  • Original NMR restraints for 2RQC from PDB
  • Retrieve 2RQC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RQC from S2C, [Save to disk]
  • View 2RQC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RQC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RQC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rqc_A] [2rqc] [2rqc_B]
  • SWISS-PROT database: [Q92879]
  • Domain organization of [CELF1_HUMAN] by SWISSPFAM
  • Domain found in 2RQC: [RRM ] by SMART
  • Other resources with information on 2RQC
  • Community annotation for 2RQC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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