2RR4 Metal-Binding Protein Nuclear Protein date Mar 24, 2010
title Complex Structure Of The Zf-Cw Domain And The H3k4me3 Peptid
authors F.He, Y.Muto, M.Inoue, T.Kigawa, M.Shirouzu, T.Terada, S.Yokoyama, Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Zinc Finger Cw-Type Pwwp Domain Protein 1
Chain: A
Fragment: Zf-Cw Domain, Residues 246-307
Synonym: Zf-Cw
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Zcwpw1
Expression_system: Cell Free Synthsis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P060116-12
Other_details: E. Coli - Cell Free

Molecule: Histone H3
Chain: B
Fragment: Histone H3 Tail, Unp Residues 2-11
Engineered: Yes
Other_details: H3k4me3 Peptide

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Chemical Synthesized, Purchased
methodSolution NMR
ligand M3L, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural insight into the zinc finger CW domain as a histone modification reader., He F, Umehara T, Saito K, Harada T, Watanabe S, Yabuki T, Kigawa T, Takahashi M, Kuwasako K, Tsuda K, Matsuda T, Aoki M, Seki E, Kobayashi N, Guntert P, Yokoyama S, Muto Y, Structure. 2010 Sep 8;18(9):1127-39. PMID:20826339
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (404 Kb) [Save to disk]
  • Biological Unit Coordinates (2rr4.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 2RR4
  • CSU: Contacts of Structural Units for 2RR4
  • Original NMR restraints for 2RR4 from PDB
  • Retrieve 2RR4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RR4 from S2C, [Save to disk]
  • View 2RR4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RR4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RR4, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rr4_A] [2rr4_B] [2rr4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2RR4
  • Community annotation for 2RR4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science