2RRD Dna Binding Protein date Jul 19, 2010
title Structure Of Hrdc Domain From Human Bloom Syndrome Protein,
authors A.Sato, M.Mishima, A.Nagai, S.Y.Kim, Y.Ito, T.Hakoshima, J.G.Jee, K
compound source
Molecule: Hrdc Domain From Bloom Syndrome Protein
Chain: A
Synonym: Blm Hrdc Domain
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Blm, Recq2, Recql3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pgex-5x-1
methodSolution NMR
Primary referenceSolution structure of the HRDC domain of human Bloom syndrome protein BLM., Sato A, Mishima M, Nagai A, Kim SY, Ito Y, Hakoshima T, Jee JG, Kitano K, J Biochem. 2010 Oct;148(4):517-25. Epub 2010 Aug 25. PMID:20739603
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (536 Kb) [Save to disk]
  • Biological Unit Coordinates (2rrd.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 2RRD
  • Original NMR restraints for 2RRD from PDB
  • Retrieve 2RRD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RRD from S2C, [Save to disk]
    • View 2RRD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
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    • Visual 3D analysis of 2RRD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2RRD, from MSDmotif at EBI
  • Fold representative 2rrd from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rrd_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 2RRD with the sequences similar proteins can be viewed for 2RRD's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
    • Other resources with information on 2RRD
  • Community annotation for 2RRD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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