2RRD Dna Binding Protein date Jul 19, 2010
title Structure Of Hrdc Domain From Human Bloom Syndrome Protein,
authors A.Sato, M.Mishima, A.Nagai, S.Y.Kim, Y.Ito, T.Hakoshima, J.G.Jee, K
compound source
Molecule: Hrdc Domain From Bloom Syndrome Protein
Chain: A
Synonym: Blm Hrdc Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Blm, Recq2, Recql3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pgex-5x-1
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the HRDC domain of human Bloom syndrome protein BLM., Sato A, Mishima M, Nagai A, Kim SY, Ito Y, Hakoshima T, Jee JG, Kitano K, J Biochem. 2010 Oct;148(4):517-25. Epub 2010 Aug 25. PMID:20739603
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (536 Kb) [Save to disk]
  • Biological Unit Coordinates (2rrd.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 2RRD
  • Original NMR restraints for 2RRD from PDB
  • Retrieve 2RRD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RRD from S2C, [Save to disk]
  • View 2RRD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RRD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2RRD, from MSDmotif at EBI
  • Fold representative 2rrd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rrd_A] [2rrd]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2RRD: [HRDC ] by SMART
  • Other resources with information on 2RRD
  • Community annotation for 2RRD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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