2RSK Membrane Protein Rna date Mar 08, 2012
title Rna Aptamer Against Prion Protein In Complex With The Partia Peptide
authors T.Mashima, F.Nishikawa, Y.O.Kamatari, H.Fujiwara, S.Nishikawa, K. M.Katahira
compound source
Molecule: Rna (5'-R(Gpgpapgpgpapgpgpapgpgpa)-3'
Chain: A, B
Engineered: Yes
 Synthetic: Yes

Molecule: Partial Binding Peptide Of Major Prion Protein
Chain: C, D
Engineered: Yes
Synthetic: Yes
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Other_details: Synthetic Peptide
methodSolution NMR
Primary referenceAnti-prion activity of an RNA aptamer and its structural basis., Mashima T, Nishikawa F, Kamatari YO, Fujiwara H, Saimura M, Nagata T, Kodaki T, Nishikawa S, Kuwata K, Katahira M, Nucleic Acids Res. 2013 Jan 1;41(2):1355-1362. Epub 2012 Nov 24. PMID:23180780
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (197 Kb) [Save to disk]
  • Biological Unit Coordinates (2rsk.pdb1.gz) 20 Kb
  • CSU: Contacts of Structural Units for 2RSK
  • Original NMR restraints for 2RSK from PDB
  • Retrieve 2RSK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RSK from S2C, [Save to disk]
    • View 2RSK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2RSK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RSK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rsk_D] [2rsk_B] [2rsk] [2rsk_A] [2rsk_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2RSK
  • Community annotation for 2RSK at PDBWiki (http://pdbwiki.org)

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