2SOD Oxidoreductase (Superoxide Acceptor) date Mar 25, 1980
title Determination And Analysis Of The 2 Angstrom Structure Of Co Superoxide Dismutase
authors J.A.Tainer, E.D.Getzoff, J.S.Richardson, D.C.Richardson
compound source
Molecule: Copper,Zinc Superoxide Dismutase
Chain: O, Y, B, G
Ec: 1.15.1.1
Engineered: Yes
 Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
symmetry Space Group: C 1 2 1
R_factor 0.256 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.650 90.330 71.650 90.00 95.10 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand ACE, CU, ZN enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
note 2SOD (Molecule of the Month:pdb94)supersedes 1SOD
related structures by homologous chain: 1N18, 1SXZ
Gene
Ontology
ChainFunctionProcessComponent
O, G, Y, B


Primary referenceDetermination and analysis of the 2 A-structure of copper, zinc superoxide dismutase., Tainer JA, Getzoff ED, Beem KM, Richardson JS, Richardson DC, J Mol Biol 1982 Sep 15;160(2):181-217. PMID:7175933
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (2sod.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (2sod.pdb2.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 2SOD
  • CSU: Contacts of Structural Units for 2SOD
  • Likely Quarternary Molecular Structure file(s) for 2SOD
  • Retrieve 2SOD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2SOD from S2C, [Save to disk]
    • View 2SOD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2SOD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2SOD, from MSDmotif at EBI
  • Genome occurence of 2SOD's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2sodb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d2sodg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d2sodo_, region O [Jmol] [rasmolscript] [script source]
        - Domain d2sody_, region Y [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2sod_O] [2sod_Y] [2sod_B] [2sod_G] [2sod]
  • SWISS-PROT database: [P00442]
  • Domain organization of [SODC_BOVIN] by SWISSPFAM
    • Other resources with information on 2SOD
  • Community annotation for 2SOD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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