2SRT Hydrolase Hydrolase Inhibitor date Mar 22, 1995
title Catalytic Domain Of Human Stromelysin-1 At Ph 5.5 And 40oc C With Inhibitor
authors P.R.Gooley, J.F.O'Connell
compound source
Molecule: Stromelysin-1
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Bl21
Gene: Human Stromelysin-1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pro-Sfstr
Expression_system_gene: Human Stromelysin-1
methodSolution NMR
ligand INH, ZN enzyme Hydrolase E.C. BRENDA
note 2SRT supersedes 1SRT
related structures by homologous chain: 1BM6, 3AYK

Primary referenceThe NMR structure of the inhibited catalytic domain of human stromelysin-1., Gooley PR, O'Connell JF, Marcy AI, Cuca GC, Salowe SP, Bush BL, Hermes JD, Esser CK, Hagmann WK, Springer JP, et al., Nat Struct Biol 1994 Feb;1(2):111-8. PMID:7656014
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1389 Kb) [Save to disk]
  • Biological Unit Coordinates (2srt.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 2SRT
  • CSU: Contacts of Structural Units for 2SRT
  • Original NMR restraints for 2SRT from PDB
  • Retrieve 2SRT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2SRT from S2C, [Save to disk]
  • View 2SRT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2SRT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2SRT, from MSDmotif at EBI
  • Genome occurence of 2SRT's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2srt__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 2srt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2srt_A] [2srt]
  • SWISS-PROT database: [P08254]
  • Domain organization of [MMP3_HUMAN] by SWISSPFAM
  • Domain found in 2SRT: [ZnMc ] by SMART
  • Other resources with information on 2SRT
  • Community annotation for 2SRT at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 2SRT from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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