2TRC Complex (Transducer Transduction) date Jan 06, 1997
title Phosducintransducin Beta-Gamma Complex
authors R.Gaudet, A.Bohm, P.B.Sigler
compound source
Molecule: Transducin
Chain: B
Fragment: Lys-C Resistant Fragment, The Gamma Subunit Cleav Residue 68;
Synonym: Gt Beta-Gamma
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Cell_line: B834
Organ: Eye
Tissue: Retina
Cellular_location: Rod Outer Segments
Other_details: Purified From Bovine Rod Outer Segments

Molecule: Transducin
Chain: G
Fragment: Lys-C Resistant Fragment, The Gamma Subunit Cleav Residue 68;
Synonym: Gt Beta-Gamma

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Cell_line: B834
Organ: Eye
Tissue: Retina
Cellular_location: Rod Outer Segments
Other_details: Purified From Bovine Rod Outer Segments

Molecule: Phosducin
Chain: P
Synonym: Meka, Pp33
Engineered: Yes

Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Strain: Zivic-Miller Sprague-Dawley
Cell_line: B834
Atcc: 63147
Organ: Pineal Gland, Retina
Tissue: Retina
Cellular_location: Cytosolic
symmetry Space Group: P 21 21 21
R_factor 0.190 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.700 88.510 98.870 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand GD, MSE enzyme
related structures by homologous chain: 1A0R, 1GG2, 1GP2, 1TBG
Gene
Ontology
ChainFunctionProcessComponent
B


G


Primary referenceCrystal structure at 2.4 angstroms resolution of the complex of transducin betagamma and its regulator, phosducin., Gaudet R, Bohm A, Sigler PB, Cell 1996 Nov 1;87(3):577-88. PMID:8898209
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (2trc.pdb1.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 2TRC
  • CSU: Contacts of Structural Units for 2TRC
  • Likely Quarternary Molecular Structure file(s) for 2TRC
  • Structure Factors (211 Kb)
  • Retrieve 2TRC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2TRC from S2C, [Save to disk]
  • Re-refined 2trc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2TRC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2TRC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2TRC, from MSDmotif at EBI
  • Genome occurence of 2TRC's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2trcb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d2trcg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d2trcp_, region P [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2trc_P] [2trc] [2trc_B] [2trc_G]
  • SWISS-PROT database: [P62871] [P02698] [P20942]
  • Domain organization of [GBB1_BOVIN] [GBG1_BOVIN] [PHOS_RAT] by SWISSPFAM
  • Domains found in 2TRC: [GGL] [G_gamma] [WD40 ] by SMART
  • Other resources with information on 2TRC
  • Community annotation for 2TRC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 2TRC from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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