2TUN Lymphokine date Oct 06, 1993
title Conformational Changes In The (Ala-84-Val) Mutant Of Tumor N Factor
authors P.Saludjian, T.Prange
compound source
Molecule: Tumor Necrosis Factor-Alpha
Chain: A, B, C, D, E, F
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 31 2 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
166.000 166.000 93.700 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.10 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (147 Kb) [Save to disk]
  • Biological Unit Coordinates (2tun.pdb1.gz) 144 Kb
  • Biological Unit Coordinates (2tun.pdb2.gz) 73 Kb
  • Biological Unit Coordinates (2tun.pdb3.gz) 73 Kb
  • CSU: Contacts of Structural Units for 2TUN
  • Likely Quarternary Molecular Structure file(s) for 2TUN
  • Retrieve 2TUN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2TUN from S2C, [Save to disk]
  • View 2TUN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2TUN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2TUN, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2tuna_, region A [Jmol] [rasmolscript] [script source]
        - Domain d2tunb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d2tunc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d2tund_, region D [Jmol] [rasmolscript] [script source]
        - Domain d2tune_, region E [Jmol] [rasmolscript] [script source]
        - Domain d2tunf_, region F [Jmol] [rasmolscript] [script source]
  • Fold representative 2tun from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2tun_B] [2tun_D] [2tun_A] [2tun] [2tun_E] [2tun_F] [2tun_C]
  • SWISS-PROT database: [P01375]
  • Domain organization of [TNFA_HUMAN] by SWISSPFAM
  • Domain found in 2TUN: [TNF ] by SMART
  • Other resources with information on 2TUN
  • Community annotation for 2TUN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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