2UV3 Receptor date Mar 08, 2007
title Structure Of The Signal-Regulatory Protein (Sirp) Alpha Domain That Binds Cd47.
authors D.Hatherley, K.Harlos, D.C.Dunlop, D.I.Stuart, A.N.Barclay
compound source
Molecule: Tyrosine-Protein Phosphatase Non-Receptor Type Su 1;
Chain: A, B
Fragment: Cd47 Binding Domain, Residues 31-148
Synonym: Signal-Regulatory Protein Alpha N-Terminal Domain, Substrate 1, Shps-1, Inhibitory Receptor Shps-1, Signal-Re Protein Alpha-1, Sirp-Alpha-1, Sirp-Alpha-2, Sirp-Alpha-3, Antigen, Brain Ig-Like Molecule With Tyrosine-Based Activa Motifs, Bit, Macrophage Fusion Receptor, P84, Cd172a Antig
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029
Expression_system_variant: Lec3.2.8.1
Expression_system_cell: Ovary
Expression_system_vector: Pee14
symmetry Space Group: C 1 2 1
R_factor 0.204 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.831 56.266 82.245 90.00 114.90 90.00
method X-Ray Diffractionresolution 1.8 Å
ligand MES, SO4 enzyme
Primary referenceThe structure of the macrophage signal regulatory protein alpha (SIRPalpha) inhibitory receptor reveals a binding face reminiscent of that used by T cell receptors., Hatherley D, Harlos K, Dunlop DC, Stuart DI, Barclay AN, J Biol Chem. 2007 May 11;282(19):14567-75. Epub 2007 Mar 16. PMID:17369261
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (2uv3.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 2UV3
  • CSU: Contacts of Structural Units for 2UV3
  • Likely Quarternary Molecular Structure file(s) for 2UV3
  • Structure Factors (212 Kb)
  • Retrieve 2UV3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2UV3 from S2C, [Save to disk]
  • Re-refined 2uv3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2UV3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2UV3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2UV3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2uv3] [2uv3_A] [2uv3_B]
  • SWISS-PROT database: [P78324]
  • Domain organization of [SHPS1_HUMAN] by SWISSPFAM
  • Domain found in 2UV3: [IG ] by SMART
  • Other resources with information on 2UV3
  • Community annotation for 2UV3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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