2UVL Metal Binding Protein date Mar 12, 2007
title Human Bir3 Domain Of Baculoviral Inhibitor Of Apoptosis Repe Containing 3 (Birc3)
authors M.Moche, L.Lehtio, C.Arrowsmith, H.Berglund, R.Busam, R.Collins, L.G.Dahlgren, A.Edwards, S.Flodin, A.Flores, S.Graslund, M.Hamma B.M.Hallberg, L.Holmberg-Schiavone, I.Johansson, T.Karlberg, T.Kotenyova, T.Nyman, D.Ogg, C.Persson, J.Sagemark, P.Stenmark, M.Sundstrom, A.G.Thorsell, M.Upsten, S.Van Den Berg, J.Weigelt, P.Nordlund
compound source
Molecule: Baculoviral Iap Repeat-Containing Protein 3
Chain: A, B
Fragment: Bir3 Domain, Residues 244-337
Synonym: Human Baculoviral Iap Repeat-Containing 3, Inhibit Apoptosis Protein 1, Hiap1, Hiap-1, C-Iap2, Tnfr2-Traf-Sign Complex Protein 1, Iap Homolog C, Apoptosis Inhibitor 2, Ap Finger Protein 49;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pnic-Bsa4
Other_details: Mammalian Gene Collection (Mgc)
symmetry Space Group: P 21 21 21
R_factor 0.202 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.410 53.720 85.610 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.91 Å
ligand GOL, ZN enzyme
Primary referenceStructures of BIR domains from human NAIP and cIAP2., Herman MD, Moche M, Flodin S, Welin M, Tresaugues L, Johansson I, Nilsson M, Nordlund P, Nyman T, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Nov 1;65(Pt, 11):1091-6. Epub 2009 Oct 24. PMID:19923725
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (2uvl.pdb1.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 2UVL
  • CSU: Contacts of Structural Units for 2UVL
  • Likely Quarternary Molecular Structure file(s) for 2UVL
  • Structure Factors (235 Kb)
  • Retrieve 2UVL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2UVL from S2C, [Save to disk]
  • Re-refined 2uvl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2UVL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2UVL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2UVL, from MSDmotif at EBI
  • Fold representative 2uvl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2uvl_A] [2uvl_B] [2uvl]
  • SWISS-PROT database: [Q13489]
  • Domain organization of [BIRC3_HUMAN] by SWISSPFAM
  • Domain found in 2UVL: [BIR ] by SMART
  • Other resources with information on 2UVL
  • Community annotation for 2UVL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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