2UZC Signaling Protein date Apr 27, 2007
title Structure Of Human Pdlim5 In Complex With The C-Terminal Pep Human Alpha-Actinin-1
authors G.Bunkoczi, J.Elkins, E.Salah, N.Burgess-Brown, E.Papagrigoriou, A.C.W.Pike, A.Turnbull, O.Gileadi, F.Von Delft, C.H.Arrowsmith, A.Edwards, M.Sundstrom, J.Weigelt, D.Doyle
compound source
Molecule: Pdz And Lim Domain 5
Chain: A, B, C, D, E
Fragment: Residues 1-83
Synonym: Human Pdlim5
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Bsa4
symmetry Space Group: P 1 21 1
R_factor 0.163 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.250 36.474 88.706 90.00 99.15 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand CL, EDO enzyme
Primary referenceUnusual binding interactions in PDZ domain crystal structures help explain binding mechanisms., Elkins JM, Gileadi C, Shrestha L, Phillips C, Wang J, Muniz JR, Doyle DA, Protein Sci. 2010 Apr;19(4):731-41. doi: 10.1002/pro.349. PMID:20120020
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (2uzc.pdb1.gz) 16 Kb
  • Biological Unit Coordinates (2uzc.pdb2.gz) 17 Kb
  • Biological Unit Coordinates (2uzc.pdb3.gz) 17 Kb
  • Biological Unit Coordinates (2uzc.pdb4.gz) 18 Kb
  • Biological Unit Coordinates (2uzc.pdb5.gz) 17 Kb
  • LPC: Ligand-Protein Contacts for 2UZC
  • CSU: Contacts of Structural Units for 2UZC
  • Likely Quarternary Molecular Structure file(s) for 2UZC
  • Structure Factors (762 Kb)
  • Retrieve 2UZC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2UZC from S2C, [Save to disk]
  • Re-refined 2uzc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2UZC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2UZC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2UZC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2uzc_B] [2uzc_E] [2uzc] [2uzc_A] [2uzc_D] [2uzc_C]
  • SWISS-PROT database: [Q96HC4] [Q8WVK0]
  • Domain organization of [PDLI5_HUMAN] [Q8WVK0_HUMAN] by SWISSPFAM
  • Domain found in 2UZC: [PDZ ] by SMART
  • Other resources with information on 2UZC
  • Community annotation for 2UZC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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