2V1L Unknown Function date May 25, 2007
title Structure Of The Conserved Hypothetical Protein Vc1805 From Pathogenicity Island Vpi-2 Of Vibrio Cholerae O1 Biovar Eltor Str. N16961 Shares Structural Homology With The Human P32 Protein
authors M.A.Sheikh, J.A.Potter, K.A.Johnson, E.F.Boyd, G.L.Taylor
compound source
Molecule: Hypothetical Protein
Chain: A
Synonym: Hypothetical Protein Vc1805
Engineered: Yes
Organism_scientific: Vibrio Cholerae
Organism_taxid: 127906
Strain: O1
Variant: Biovar Eltor Str. N16961
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
symmetry Space Group: P 31 2 1
R_factor 0.235 R_Free 0.316
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.312 78.312 42.288 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.13 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of VC1805, a conserved hypothetical protein from a Vibrio cholerae pathogenicity island, reveals homology to human p32., Sheikh MA, Potter JA, Johnson KA, Sim RB, Boyd EF, Taylor GL, Proteins. 2008 Feb 25;. PMID:18300248
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (2v1l.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 2V1L
  • Likely Quarternary Molecular Structure file(s) for 2V1L
  • Structure Factors (60 Kb)
  • Retrieve 2V1L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2V1L from S2C, [Save to disk]
  • Re-refined 2v1l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2V1L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2V1L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2V1L, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2v1l] [2v1l_A]
  • SWISS-PROT database: [Q9KR41]
  • Domain organization of [Q9KR41_VIBCH] by SWISSPFAM
  • Other resources with information on 2V1L
  • Community annotation for 2V1L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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