2V22 Transferase date May 31, 2007
title Replace: A Strategy For Iterative Design Of Cyclin Binding G Inhibitors
authors M.J.Andrews, G.Kontopidis, C.Mcinnes, A.Plater, L.Innes, A.Cowan, P.Jewsbury, P.M.Fischer
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A, C
Synonym: P33 Protein Kinase, Cyclin-Dependent Kinase 2
Ec: 2.7.1.37
Engineered: Yes
Other_details: Triazol-1-Methyl-Pyrimidin Inhibitor
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus

Molecule: Cyclin-A2
Chain: B, D
Synonym: Cyclin-A
Engineered: Yes
Other_details: Cap-Tetrapeptide Inhibitor

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.171 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.693 113.571 156.025 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand C35 enzyme Transferase E.C.2.7.1.37 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceREPLACE: a strategy for iterative design of cyclin-binding groove inhibitors., Andrews MJ, Kontopidis G, McInnes C, Plater A, Innes L, Cowan A, Jewsbury P, Fischer PM, Chembiochem. 2006 Dec;7(12):1909-15. PMID:17051658
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (197 Kb) [Save to disk]
  • Biological Unit Coordinates (2v22.pdb1.gz) 95 Kb
  • Biological Unit Coordinates (2v22.pdb2.gz) 95 Kb
  • LPC: Ligand-Protein Contacts for 2V22
  • CSU: Contacts of Structural Units for 2V22
  • Likely Quarternary Molecular Structure file(s) for 2V22
  • Structure Factors (703 Kb)
  • Retrieve 2V22 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2V22 from S2C, [Save to disk]
  • Re-refined 2v22 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2V22 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2V22
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2V22, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2v22_B] [2v22_C] [2v22] [2v22_A] [2v22_D]
  • SWISS-PROT database: [P20248] [P24941]
  • Domain organization of [CCNA2_HUMAN] [CDK2_HUMAN] by SWISSPFAM
  • Domains found in 2V22: [CYCLIN] [Cyclin_C] [S_TKc ] by SMART
  • Other resources with information on 2V22
  • Community annotation for 2V22 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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