2V37 Cell Adhesion date Jun 13, 2007
title Solution Structure Of The N-Terminal Extracellular Domain Of Cadherin
authors S.A.Dames, E.J.Bang, T.Ahrens, D.Haeussinger, S.Grzesiek
compound source
Molecule: Cadherin-13
Chain: A
Fragment: Ec1, Residues 139-243
Synonym: Human T-Cadherin, Truncated-Cadherin, T-Cadherin, Heart-Cadherin, H-Cadherin, P105;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet19b
methodSolution NMR
ligand
enzyme Oxidoreductase E.C.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceInsights into the Low Adhesive Capacity of Human T-cadherin from the NMR Structure of Its N-terminal Extracellular Domain., Dames SA, Bang E, Haussinger D, Ahrens T, Engel J, Grzesiek S, J Biol Chem. 2008 Aug 22;283(34):23485-95. Epub 2008 Jun 10. PMID:18550521
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (556 Kb) [Save to disk]
  • Biological Unit Coordinates (2v37.pdb1.gz) 29 Kb
  • CSU: Contacts of Structural Units for 2V37
  • Original NMR restraints for 2V37 from PDB
  • Retrieve 2V37 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2V37 from S2C, [Save to disk]
  • View 2V37 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2V37
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2V37, from MSDmotif at EBI
  • Fold representative 2v37 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2v37] [2v37_A]
  • SWISS-PROT database: [P55290]
  • Domain organization of [CAD13_HUMAN] by SWISSPFAM
  • Domain found in 2V37: [CA ] by SMART
  • Other resources with information on 2V37
  • Community annotation for 2V37 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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