2V3F Hydrolase date Jun 17, 2007
title Acid-Beta-Glucosidase Produced In Carrot
authors Y.Shaaltiel, D.Bartfeld, S.Hashmueli, G.Baum, E.Brill-Almon, G.Galili, O.Dym, S.A.Boldin-Adamsky, I.Silman, J.L.Sussman, A.H.Futerman, D.Aviezer, Israel Structural Proteomics Center(Ispc)
compound source
Molecule: Glucosylceramidase
Chain: A, B
Synonym: Beta-Glucocerebrosidase, Acid-Beta-Glucosidase, D-Glucosyl-N-Acylsphingosine Glucohydrolase, Alglucerase, Imiglucerase;
Ec: 3.2.1.45
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Daucus Carota
Expression_system_taxid: 4039
symmetry Space Group: P 1 21 1
R_factor 0.149 R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.088 97.104 82.932 90.00 104.43 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand BTB, FUC, MAN, NAG, SO4 enzyme Hydrolase E.C.3.2.1.45 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • negative regulation of inter...

  • Primary referenceProduction of glucocerebrosidase with terminal mannose glycans for enzyme replacement therapy of Gaucher's disease using a plant cell system., Shaaltiel Y, Bartfeld D, Hashmueli S, Baum G, Brill-Almon E, Galili G, Dym O, Boldin-Adamsky SA, Silman I, Sussman JL, Futerman AH, Aviezer D, Plant Biotechnol J. 2007 Sep;5(5):579-90. Epub 2007 May 24. PMID:17524049
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (183 Kb) [Save to disk]
  • Biological Unit Coordinates (2v3f.pdb1.gz) 91 Kb
  • Biological Unit Coordinates (2v3f.pdb2.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 2V3F
  • CSU: Contacts of Structural Units for 2V3F
  • Likely Quarternary Molecular Structure file(s) for 2V3F
  • Structure Factors (574 Kb)
  • Retrieve 2V3F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2V3F from S2C, [Save to disk]
  • Re-refined 2v3f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2V3F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2V3F
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2V3F, from MSDmotif at EBI
  • Fold representative 2v3f from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2v3f] [2v3f_B] [2v3f_A]
  • SWISS-PROT database: [P04062]
  • Domain organization of [GLCM_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2V3F with the sequences similar proteins can be viewed for 2V3F's classification [GLCM_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [GLCM_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2V3F
  • Community annotation for 2V3F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science