2V4Q	Transferase	date	Sep 26, 2008
title	Post-Insertion Complex Of The Y-Family Dna Polymerase Dpo4 W Containing Template Dna
authors	R.L.Eoff, J.B.Stafford, J.Szekely, C.J.Rizzo, M.Egli, F.P.Guenger L.J.Marnett
compound		source
Molecule: Dna Polymerase Iv Chain: A Ec: 2.7.7.7 Engineered: Yes Other_details: Y-Family Dna Polymerase From Sulfolobus Solf		Organism_scientific: Sulfolobus Solfataricus Organism_taxid: 273057 Strain: P2 Atcc: 35092 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pet22b
Molecule: 5'-D(Gpgpgpgpgpapapgpgpap Tptpcpc)- Chain: P Synonym: Primer Dna Engineered: Yes Other_details: 14 Base Primer Dna 5'-Ggg Gga Agg Att Cc-3'		Synthetic: Yes
Molecule: 5'-D(Tpcpapc M1gpgpapaptpcpcp Tptpcpcpcpcpc)-3'; Chain: T Synonym: Template Dna Engineered: Yes Other_details: 18 Base Template Dna 5'-Tca C(M1g)G Aat Cct		Synthetic: Yes
symmetry	Space Group: P 21 21 2	R_factor 0.205 R_Free 0.254
crystal cell	length a length b length c angle alpha angle beta angle gamma 92.610 103.140 52.010 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	CA, DGT, M1G	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural and Functional Analysis of Sulfolobus solfataricus Y-family DNA polymerase Dpo4-catalyzed Bypass of the Malondialdehyde-deoxyguanosine Adduct., Eoff RL, Stafford JB, Szekely J, Rizzo CJ, Egli M, Guengerich FP, Marnett LJ, Biochemistry. 2009 Jun 4. PMID:19492857

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk] Biological Unit Coordinates (2v4q.pdb1.gz) 71 Kb LPC: Ligand-Protein Contacts for 2V4Q CSU: Contacts of Structural Units for 2V4Q Likely Quarternary Molecular Structure file(s) for 2V4Q Structure Factors (117 Kb) Retrieve 2V4Q in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2V4Q from S2C, [Save to disk] Re-refined 2v4q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2V4Q in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2V4Q

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2V4Q, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2v4q_T] [2v4q_A] [2v4q] [2v4q_P] SWISS-PROT database: [Q97W02] Domain organization of [DPO42_SULSO] by SWISSPFAM

Other resources with information on 2V4Q

Community annotation for 2V4Q at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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