2V53	Cell Adhesion	date	Oct 01, 2008
title	Crystal Structure Of A Sparc-Collagen Complex
authors	E.Hohenester, T.Sasaki, C.Giudici, R.W.Farndale, H.P.Bachinger
compound		source
Molecule: Sparc Chain: A Fragment: Fs And Ec Domains, Residues 70-212,221-303 Synonym: Secreted Protein Acidic And Rich In Cysteine, Oste On, Basement-Membrane Protein 40, Bm-40; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: 293-Ebna Expression_system_vector: Pcep-Pu
Molecule: Collagen Alpha-1(III) Chain Chain: B, C, D Fragment: Residues 564-584 Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 42 21 2	R_factor 0.254 R_Free 0.320
crystal cell	length a length b length c angle alpha angle beta angle gamma 89.790 89.790 127.100 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.20 Å
ligand	CA, HYP, NAG, SO4	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis of sequence-specific collagen recognition by SPARC., Hohenester E, Sasaki T, Giudici C, Farndale RW, Bachinger HP, Proc Natl Acad Sci U S A. 2008 Nov 25;105(47):18273-7. Epub 2008 Nov 14. PMID:19011090

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk] Biological Unit Coordinates (2v53.pdb1.gz) 99 Kb LPC: Ligand-Protein Contacts for 2V53 CSU: Contacts of Structural Units for 2V53 Likely Quarternary Molecular Structure file(s) for 2V53 Structure Factors (66 Kb) Retrieve 2V53 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2V53 from S2C, [Save to disk] Re-refined 2v53 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2V53 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2V53

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2V53, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2v53] [2v53_B] [2v53_C] [2v53_A] [2v53_D] SWISS-PROT database: [P02461] [P09486] Domain organization of [CO3A1_HUMAN] [SPRC_HUMAN] by SWISSPFAM Domains found in 2V53: [FOLN] [KAZAL ] by SMART

Other resources with information on 2V53

Community annotation for 2V53 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---