2V5T Cell Adhesion date Jul 10, 2007
title Crystal Structure Of Ncam2 Ig2-3
authors N.Kulahin, K.K.Rasmussen, O.Kristensen, V.Berezin, E.Bock, P.S.Wa M.Gajhede
compound source
Molecule: Neural Cell Adhesion Molecule 2
Chain: A
Fragment: Ig2-3, Residues 115-301
Synonym: Ncam2, N-Cam 2
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: Km71h
symmetry Space Group: P 41 21 2
R_factor 0.181 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
114.950 114.950 46.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand GOL, NAG, SO4 enzyme
note 2V5T is a representative structure
Primary referenceStructural Model and trans-Interaction of the Entire Ectodomain of the Olfactory Cell Adhesion Molecule., Kulahin N, Kristensen O, Rasmussen KK, Olsen L, Rydberg P, Vestergaard B, Kastrup JS, Berezin V, Bock E, Walmod PS, Gajhede M, Structure. 2011 Feb 9;19(2):203-11. PMID:21300289
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (2v5t.pdb1.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 2V5T
  • CSU: Contacts of Structural Units for 2V5T
  • Likely Quarternary Molecular Structure file(s) for 2V5T
  • Structure Factors (278 Kb)
  • Retrieve 2V5T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2V5T from S2C, [Save to disk]
  • Re-refined 2v5t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2V5T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2V5T
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2V5T, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2v5t] [2v5t_A]
  • SWISS-PROT database: [O15394]
  • Domain organization of [NCAM2_HUMAN] by SWISSPFAM
  • Domain found in 2V5T: [IGc2 ] by SMART
    • Other resources with information on 2V5T
  • Community annotation for 2V5T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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