2V66	Structural Protein	date	Jul 13, 2007
title	Crystal Structure Of The Coiled-Coil Domain Of Ndel1 (A.A. 58 To 169)C
authors	C.Tarricone, F.Perrina, A.Musacchio
compound		source
Molecule: Nuclear Distribution Protein Nude-Like 1 Chain: B, C, D, E Fragment: Coiled Coil, Lis1 Binding, Residues 58-168 Synonym: Ndel1, Protein Nudel, Mitosin-Associated Protein 1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pgex6p1
symmetry	Space Group: P 1 21 1	R_factor 0.233 R_Free 0.310
crystal cell	length a length b length c angle alpha angle beta angle gamma 46.431 73.221 69.026 90.00 105.40 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	HG	enzyme
Gene Ontology	Chain Function Process Component D, C, E, B
Primary reference	The structure of the coiled-coil domain of ndel1 and the basis of its interaction with lis1, the causal protein of miller-dieker lissencephaly., Derewenda U, Tarricone C, Choi WC, Cooper DR, Lukasik S, Perrina F, Tripathy A, Kim MH, Cafiso DS, Musacchio A, Derewenda ZS, Structure. 2007 Nov;15(11):1467-81. PMID:17997972

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk] Biological Unit Coordinates (2v66.pdb1.gz) 77 Kb LPC: Ligand-Protein Contacts for 2V66 CSU: Contacts of Structural Units for 2V66 Likely Quarternary Molecular Structure file(s) for 2V66 Structure Factors (182 Kb) Retrieve 2V66 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2V66 from S2C, [Save to disk] Re-refined 2v66 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2V66 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2V66

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2V66, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2v66] [2v66_B] [2v66_E] [2v66_C] [2v66_D] SWISS-PROT database: [Q9GZM8] Domain organization of [NDEL1_HUMAN] by SWISSPFAM

Other resources with information on 2V66

Community annotation for 2V66 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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