2V6H Cell Adhesion date Jul 18, 2007
title Crystal Structure Of The C1 Domain Of Cardiac Myosin Binding Protein-C
authors L.Govata, L.Carpenter, P.C.A.Da Fonseca, J.R.Helliwell, P.J.Rizkallah, E.Flashman, N.E.Chayen, C.Redwood, J.M.Squire
compound source
Molecule: Myosin-Binding Protein C, Cardiac-Type
Chain: A
Fragment: C1 Domain, Residues 151-258
Synonym: Cardiac Mybp-C, C-Protein, Cardiac Muscle Isoform
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Heart
Tissue: Cardiac
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet28a
symmetry Space Group: I 41
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.848 48.848 95.132 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.55 Å
Primary referenceCrystal structure of the C1 domain of cardiac myosin binding protein-C: implications for hypertrophic cardiomyopathy., Govada L, Carpenter L, da Fonseca PC, Helliwell JR, Rizkallah P, Flashman E, Chayen NE, Redwood C, Squire JM, J Mol Biol. 2008 Apr 25;378(2):387-97. Epub 2008 Mar 4. PMID:18374358
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (2v6h.pdb1.gz) 41 Kb
  • CSU: Contacts of Structural Units for 2V6H
  • Likely Quarternary Molecular Structure file(s) for 2V6H
  • Structure Factors (117 Kb)
  • Retrieve 2V6H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2V6H from S2C, [Save to disk]
  • Re-refined 2v6h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2V6H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2V6H
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2V6H, from MSDmotif at EBI
  • Fold representative 2v6h from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2v6h] [2v6h_A]
  • SWISS-PROT database: [Q14896]
  • Domain organization of [MYPC3_HUMAN] by SWISSPFAM
  • Domain found in 2V6H: [IG ] by SMART
  • Alignments of the sequence of 2V6H with the sequences similar proteins can be viewed for 2V6H's classification [MYPC3_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [MYPC3_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2V6H
  • Community annotation for 2V6H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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