2V6Q Apoptosis date Jul 20, 2007
title Crystal Structure Of A Bhrf-1 : Bim Bh3 Complex
authors M.Kvansakul, D.C.S.Huang, P.M.Colman
compound source
Molecule: Bhrf1 Protein
Chain: A
Fragment: Residues 1-160
Synonym: Bhrf1, Ea-R, Nuclear Antigen, Bhrf-1, Early Antigen Protein R;
Organism_scientific: Human Herpesvirus 4
Organism_common: Epstein-Barr Virus
Organism_taxid: 10376
Strain: Gd1

Molecule: Bcl-2-Like Protein 11
Chain: B
Fragment: Residues 141-166
Synonym: Bcl2-Interacting Mediator Of Cell Death, Bcl2-L-11, Bcl2-Like 11 Transcript Variant 9, Bim

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 32 2 1
R_factor 0.206 R_Free 0.249
length a length b length c angle alpha angle beta angle gamma
62.736 62.736 92.523 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand BR enzyme

Primary referenceStructural Basis for Apoptosis Inhibition by Epstein-Barr Virus BHRF1., Kvansakul M, Wei AH, Fletcher JI, Willis SN, Chen L, Roberts AW, Huang DC, Colman PM, PLoS Pathog. 2010 Dec 23;6(12):e1001236. PMID:21203485
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (2v6q.pdb1.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 2V6Q
  • CSU: Contacts of Structural Units for 2V6Q
  • Likely Quarternary Molecular Structure file(s) for 2V6Q
  • Structure Factors (44 Kb)
  • Retrieve 2V6Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2V6Q from S2C, [Save to disk]
  • Re-refined 2v6q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2V6Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2V6Q
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2V6Q, from MSDmotif at EBI
  • Fold representative 2v6q from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2v6q_A] [2v6q_B] [2v6q]
  • SWISS-PROT database: [O43521] [P03182]
  • Belongs to the pro-apoptotic bcl-2-family protein bim (bim) family according to TCDB.
  • Domain organization of [B2L11_HUMAN] [EAR_EBVB9] by SWISSPFAM
  • Other resources with information on 2V6Q
  • Community annotation for 2V6Q at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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