2V71 Nuclear Protein date Jul 25, 2007
title Coiled-Coil Region Of Nudel
authors U.Derewenda, D.R.Cooper, M.H.Kim, Z.S.Derewenda
compound source
Molecule: Nuclear Distribution Protein Nude-Like 1
Chain: A, B
Fragment: Coiled-Coil Domain, Residues 8-193
Synonym: Protein Nudel, Nudel
Engineered: Yes
Mutation: Yes
 Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) Ripl
Expression_system_plasmid: Phis Parallel 1
symmetry Space Group: C 1 2 1
R_factor 0.253 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.872 44.975 124.377 90.00 97.35 90.00
method X-Ray Diffractionresolution 2.24 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe structure of the coiled-coil domain of ndel1 and the basis of its interaction with lis1, the causal protein of miller-dieker lissencephaly., Derewenda U, Tarricone C, Choi WC, Cooper DR, Lukasik S, Perrina F, Tripathy A, Kim MH, Cafiso DS, Musacchio A, Derewenda ZS, Structure. 2007 Nov;15(11):1467-81. PMID:17997972
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (2v71.pdb1.gz) 106 Kb
  • LPC: Ligand-Protein Contacts for 2V71
  • CSU: Contacts of Structural Units for 2V71
  • Likely Quarternary Molecular Structure file(s) for 2V71
  • Structure Factors (172 Kb)
  • Retrieve 2V71 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2V71 from S2C, [Save to disk]
  • Re-refined 2v71 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2V71 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2V71
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2V71, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2v71_A] [2v71] [2v71_B]
  • SWISS-PROT database: [Q78PB6]
  • Domain organization of [NDEL1_RAT] by SWISSPFAM
    • Other resources with information on 2V71
  • Community annotation for 2V71 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science