2V76 Protein Binding date Jul 26, 2007
title Crystal Structure Of The Human Dok1 Ptb Domain
authors C.L.Oxley, N.J.Anthis, E.D.Lowe, I.D.Campbell, K.L.Wegener
compound source
Molecule: Docking Protein 1
Chain: A, B, C, D
Fragment: Ptb Domain, Residues 152-256
Synonym: Downstream Of Tyrosine Kinase 1, P62, Dok, Pp62, H Ptb;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.188 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.880 100.168 67.101 90.00 117.34 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand EDO, GOL, PGE, SO4 enzyme
note 2V76 is a representative structure
Primary referenceAn integrin phosphorylation switch: the effect of beta3 integrin tail phosphorylation on DOK1 and talin binding., Oxley CL, Anthis NJ, Lowe ED, Vakonakis I, Campbell ID, Wegener KL, J Biol Chem. 2007 Dec 21;. PMID:18156175
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (152 Kb) [Save to disk]
  • Biological Unit Coordinates (2v76.pdb1.gz) 38 Kb
  • Biological Unit Coordinates (2v76.pdb2.gz) 39 Kb
  • Biological Unit Coordinates (2v76.pdb3.gz) 38 Kb
  • Biological Unit Coordinates (2v76.pdb4.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 2V76
  • CSU: Contacts of Structural Units for 2V76
  • Likely Quarternary Molecular Structure file(s) for 2V76
  • Structure Factors (801 Kb)
  • Retrieve 2V76 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2V76 from S2C, [Save to disk]
  • Re-refined 2v76 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2V76 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2V76
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2V76, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2v76_B] [2v76_A] [2v76_C] [2v76_D] [2v76]
  • SWISS-PROT database: [Q99704]
  • Domain organization of [DOK1_HUMAN] by SWISSPFAM
  • Domains found in 2V76: [IRS] [PTBI ] by SMART
    • Other resources with information on 2V76
  • Community annotation for 2V76 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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