2V85	Protein Binding	date	Aug 02, 2007
title	Crystal Structure Of Rag2-Phd Finger In Complex With H3r2me1 Peptide
authors	S.Ramon-Maiques, W.Yang
compound		source
Molecule: Vdj Recombination-Activating Protein 2 Chain: A, B Fragment: Residues 414-487 Synonym: Rag2, Rag2-Phd Finger Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pgex-6p-1
Molecule: H3r2me1k4me3 Peptide Chain: D, E Fragment: H3 (1-21), Biotinilated At C-Terminus Engineered: Yes Other_details: R2 Monomethylated And K4 Trimethylated		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: C 1 2 1	R_factor 0.187 R_Free 0.197
crystal cell	length a length b length c angle alpha angle beta angle gamma 76.711 46.936 56.955 90.00 103.65 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	M3L, NMM, ZN	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	The plant homeodomain finger of RAG2 recognizes histone H3 methylated at both lysine-4 and arginine-2., Ramon-Maiques S, Kuo AJ, Carney D, Matthews AG, Oettinger MA, Gozani O, Yang W, Proc Natl Acad Sci U S A. 2007 Nov 27;104(48):18993-8. Epub 2007 Nov 19. PMID:18025461

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk] Biological Unit Coordinates (2v85.pdb1.gz) 17 Kb Biological Unit Coordinates (2v85.pdb2.gz) 17 Kb LPC: Ligand-Protein Contacts for 2V85 CSU: Contacts of Structural Units for 2V85 Likely Quarternary Molecular Structure file(s) for 2V85 Structure Factors (101 Kb) Retrieve 2V85 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2V85 from S2C, [Save to disk] Re-refined 2v85 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2V85 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2V85

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2V85, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2v85_B] [2v85_D] [2v85_A] [2v85_E] [2v85] SWISS-PROT database: [P21784] Domain organization of [RAG2_MOUSE] by SWISSPFAM

Other resources with information on 2V85

Community annotation for 2V85 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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