2V8S Protein Transport date Aug 14, 2007
title Vti1b Habc Domain - Epsinr Enth Domain Complex
authors D.J.Owen, A.J.Mccoy, B.M.Collins, S.E.Miller
compound source
Molecule: Clathrin Interactor 1
Chain: E
Fragment: Enth, Residues 20-166
Synonym: Epsinr, Epsin-4, Epsin-Related Protein, Enthoprotin, Clathrin-Interacting Protein Localized In The Trans-Golgi Region, Clint;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 De3 Plyss
Expression_system_plasmid: Pet

Molecule: Vesicle Transport Through Interaction With T-Snares Homolog 1b;
Chain: V
Fragment: Habc Domain, Residues 1-96
Synonym: Vti1b, Vesicle Transport V-Snare Protein Vti1-Like 1, Vti1-Rp1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 De3 Plyss
Expression_system_plasmid: Pet
symmetry Space Group: C 1 2 1
R_factor 0.196 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.231 60.935 40.998 90.00 94.09 90.00
method X-Ray Diffractionresolution 2.22 Å
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
E


V


Primary referenceA SNARE-adaptor interaction is a new mode of cargo recognition in clathrin-coated vesicles., Miller SE, Collins BM, McCoy AJ, Robinson MS, Owen DJ, Nature. 2007 Nov 22;450(7169):570-4. PMID:18033301
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (2v8s.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 2V8S
  • CSU: Contacts of Structural Units for 2V8S
  • Likely Quarternary Molecular Structure file(s) for 2V8S
  • Structure Factors (165 Kb)
  • Retrieve 2V8S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2V8S from S2C, [Save to disk]
  • Re-refined 2v8s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2V8S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2V8S
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2V8S, from MSDmotif at EBI
  • Fold representative 2v8s from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2v8s_E] [2v8s_V] [2v8s]
  • SWISS-PROT database: [Q14677] [Q9UEU0]
  • Belongs to the synaptosomal vesicle fusion pore (svf-pore) family according to TCDB.
  • Domain organization of [EPN4_HUMAN] [VTI1B_HUMAN] by SWISSPFAM
  • Domain found in 2V8S: [ENTH ] by SMART
  • Other resources with information on 2V8S
  • Community annotation for 2V8S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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