2V8S	Protein Transport	date	Aug 14, 2007
title	Vti1b Habc Domain - Epsinr Enth Domain Complex
authors	D.J.Owen, A.J.Mccoy, B.M.Collins, S.E.Miller
compound		source
Molecule: Clathrin Interactor 1 Chain: E Fragment: Enth, Residues 20-166 Synonym: Epsinr, Epsin-4, Epsin-Related Protein, Enthoprotin, Clathrin-Interacting Protein Localized In The Trans-Golgi Region, Clint; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 De3 Plyss Expression_system_plasmid: Pet
Molecule: Vesicle Transport Through Interaction With T-Snares Homolog 1b; Chain: V Fragment: Habc Domain, Residues 1-96 Synonym: Vti1b, Vesicle Transport V-Snare Protein Vti1-Like 1, Vti1-Rp1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 De3 Plyss Expression_system_plasmid: Pet
symmetry	Space Group: C 1 2 1	R_factor 0.196 R_Free 0.284
crystal cell	length a length b length c angle alpha angle beta angle gamma 102.231 60.935 40.998 90.00 94.09 90.00
method	X-Ray Diffraction	resolution	2.22 Å
ligand	GOL	enzyme
Gene Ontology	Chain Function Process Component E V
Primary reference	A SNARE-adaptor interaction is a new mode of cargo recognition in clathrin-coated vesicles., Miller SE, Collins BM, McCoy AJ, Robinson MS, Owen DJ, Nature. 2007 Nov 22;450(7169):570-4. PMID:18033301

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk] Biological Unit Coordinates (2v8s.pdb1.gz) 42 Kb LPC: Ligand-Protein Contacts for 2V8S CSU: Contacts of Structural Units for 2V8S Likely Quarternary Molecular Structure file(s) for 2V8S Structure Factors (165 Kb) Retrieve 2V8S in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2V8S from S2C, [Save to disk] Re-refined 2v8s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2V8S in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2V8S

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2V8S, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2v8s_E] [2v8s_V] [2v8s] SWISS-PROT database: [Q14677] [Q9UEU0] Belongs to the synaptosomal vesicle fusion pore (svf-pore) family according to TCDB. Domain organization of [EPN4_HUMAN] [VTI1B_HUMAN] by SWISSPFAM Domain found in 2V8S: [ENTH ] by SMART

Other resources with information on 2V8S

Community annotation for 2V8S at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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