2V90 Protein-Binding date Aug 16, 2007
title Crystal Structure Of The 3rd Pdz Domain Of Intestine- And Kidney-Enriched Pdz Domain Ikepp (Pdzd3)
authors J.Uppenberg, C.Gileadi, C.Phillips, J.Elkins, G.Bunkoczi, C.Coope A.C.W.Pike, E.Salah, E.Ugochukwu, C.H.Arrowsmith, A.Edwards, M.S J.Weigelt, D.A.Doyle
compound source
Molecule: Pdz Domain-Containing Protein 3
Chain: A, B, C, D, E, F
Fragment: Pdz Domain, Residues 246-335
Synonym: Pdz Domain-Containing Protein 2, Intestinal And Kidney-Enriched Pdz Protein, Intestine- And Kidney-Enriche Domain Ikepp;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_cell_line: De3-R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Bsa4
symmetry Space Group: P 1 21 1
R_factor 0.193 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.150 97.950 59.500 90.00 99.59 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand SO4 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (2v90.pdb1.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 2V90
  • CSU: Contacts of Structural Units for 2V90
  • Likely Quarternary Molecular Structure file(s) for 2V90
  • Structure Factors (483 Kb)
  • Retrieve 2V90 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2V90 from S2C, [Save to disk]
  • Re-refined 2v90 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2V90 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2V90
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2V90, from MSDmotif at EBI
  • Fold representative 2v90 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2v90_F] [2v90_C] [2v90_A] [2v90_B] [2v90] [2v90_E] [2v90_D]
  • SWISS-PROT database: [Q86UT5]
  • Domain organization of [NHRF4_HUMAN] by SWISSPFAM
  • Domain found in 2V90: [PDZ ] by SMART
  • Alignments of the sequence of 2V90 with the sequences similar proteins can be viewed for 2V90's classification [NHRF4_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [NHRF4_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2V90
  • Community annotation for 2V90 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science