2V92 Transferase date Aug 20, 2007
title Crystal Structure Of The Regulatory Fragment Of Mammalian Ampk In Complexes With Atp-Amp
authors B.Xiao, R.Heath, P.Saiu, F.C.Leiper, P.Leone, C.Jing, P.A.Walker, L.Haire, J.F.Eccleston, C.T.Davis, S.R.Martin, D.Carling, S.J.Gamblin
compound source
Molecule: 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-1;
Chain: A
Fragment: Residues 396-548
Synonym: Ampk Alpha-1 Chain, Amp-Activated Protein Kinase
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 5'-Amp-Activated Protein Kinase Subunit Gamma-1
Chain: E
Synonym: Ampk Gamma-1 Chain, Ampkg, Amp-Activated Protein Kinase;
Engineered: Yes

Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 5'-Amp-Activated Protein Kinase Subunit Beta-2
Chain: B
Fragment: Residues 187-272
Synonym: Ampk Beta-2 Chain, Amp-Activated Protein Kinase
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.217 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.961 121.032 127.247 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand AMP, ATP enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


E


Primary referenceStructural basis for AMP binding to mammalian AMP-activated protein kinase., Xiao B, Heath R, Saiu P, Leiper FC, Leone P, Jing C, Walker PA, Haire L, Eccleston JF, Davis CT, Martin SR, Carling D, Gamblin SJ, Nature. 2007 Sep 12;. PMID:17851531
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (2v92.pdb1.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 2V92
  • CSU: Contacts of Structural Units for 2V92
  • Likely Quarternary Molecular Structure file(s) for 2V92
  • Structure Factors (222 Kb)
  • Retrieve 2V92 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2V92 from S2C, [Save to disk]
  • Re-refined 2v92 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2V92 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2V92
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2V92, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2v92] [2v92_E] [2v92_B] [2v92_A]
  • SWISS-PROT database: [O43741] [P80385] [P54645]
  • Domain organization of [AAKB2_HUMAN] [AAKG1_RAT] [AAPK1_RAT] by SWISSPFAM
  • Domains found in 2V92: [AMPKBI] [CBS ] by SMART
  • Other resources with information on 2V92
  • Community annotation for 2V92 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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