2V9J Transferase date Aug 23, 2007
title Crystal Structure Of The Regulatory Fragment Of Mammalian Am Complexes With Mg.Atp-Amp
authors B.Xiao, R.Heath, P.Saiu, F.C.Leiper, P.Leone, C.Jing, P.A.Walker, L J.F.Eccleston, C.T.Davis, S.R.Martin, D.Carling, S.J.Gamblin
compound source
Molecule: 5'-Amp-Activated Protein Kinase Catalytic Subunit
Chain: A
Fragment: Residues 396-548
Synonym: Ampk Alpha-1 Chain, Amp-Activated Protein Kinase
Ec: 2.7.11.1
Engineered: Yes
 Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 5'-Amp-Activated Protein Kinase Subunit Beta-2
Chain: B
Fragment: Residues 187-272
Synonym: Ampk Beta-2 Chain, Amp-Activated Protein Kinase
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 5'-Amp-Activated Protein Kinase Subunit Gamma-1
Chain: E
Synonym: Ampk Gamma-1 Chain, Ampkg, Amp-Activated Protein K
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.225 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.790 120.685 127.069 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.53 Å
ligand AMP, ATP, MG enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


E


Primary referenceStructural basis for AMP binding to mammalian AMP-activated protein kinase., Xiao B, Heath R, Saiu P, Leiper FC, Leone P, Jing C, Walker PA, Haire L, Eccleston JF, Davis CT, Martin SR, Carling D, Gamblin SJ, Nature. 2007 Sep 12;. PMID:17851531
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (2v9j.pdb1.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 2V9J
  • CSU: Contacts of Structural Units for 2V9J
  • Likely Quarternary Molecular Structure file(s) for 2V9J
  • Structure Factors (190 Kb)
  • Retrieve 2V9J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2V9J from S2C, [Save to disk]
  • Re-refined 2v9j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2V9J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2V9J
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2V9J, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2v9j] [2v9j_E] [2v9j_A] [2v9j_B]
  • SWISS-PROT database: [O43741] [P80385] [P54645]
  • Domain organization of [AAKB2_HUMAN] [AAKG1_RAT] [AAPK1_RAT] by SWISSPFAM
  • Domains found in 2V9J: [AMPKBI] [CBS ] by SMART
    • Other resources with information on 2V9J
  • Community annotation for 2V9J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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