2VAB Complex (Mhc I Peptide) date Nov 01, 1994
title Mhc Class I H-2kb Heavy Chain Complexed With Beta-2 Microglobulin And Sendai Virus Nucleoprotein
authors D.H.Fremont, I.A.Wilson
compound source
Molecule: Mhc Class I H-2kb Heavy Chain
Chain: A
Fragment: Extracellular Domains
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Strain: Balbb
Gene: Beta-2-Microglobulin
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227

Molecule: Beta-2 Microglobulin
Chain: B
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Strain: Balbb
Gene: Beta-2-Microglobulin
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227

Molecule: Sendai Virus Nucleoprotein
Chain: P
Fragment: Residues 324 - 332
Synonym: Sev-9
Engineered: Yes

Organism_scientific: Sendai Virus
Organism_taxid: 11191
symmetry Space Group: P 21 21 2
R_factor 0.159 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
139.000 90.400 46.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
note 2VAB (Molecule of the Month:pdb62)supersedes 1VAB
related structures by homologous chain: 1S7X, 1VAD
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceCrystal structures of two viral peptides in complex with murine MHC class I H-2Kb., Fremont DH, Matsumura M, Stura EA, Peterson PA, Wilson IA, Science 1992 Aug 14;257(5072):919-27. PMID:1323877
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (2vab.pdb1.gz) 67 Kb
  • CSU: Contacts of Structural Units for 2VAB
  • Likely Quarternary Molecular Structure file(s) for 2VAB
  • Retrieve 2VAB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VAB from S2C, [Save to disk]
  • View 2VAB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VAB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2VAB, from MSDmotif at EBI
  • Genome occurence of 2VAB's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2vaba2, region A:1-181 [Jmol] [rasmolscript] [script source]
        - Domain d2vaba1, region A:182-274 [Jmol] [rasmolscript] [script source]
        - Domain d2vabb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 2vab from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vab_A] [2vab_P] [2vab] [2vab_B]
  • SWISS-PROT database: [P01887] [P01901] [P04857]
  • Domain organization of [B2MG_MOUSE] [HA1B_MOUSE] [NCAP_SENDE] by SWISSPFAM
  • Domain found in 2VAB: [IGc1 ] by SMART
  • Other resources with information on 2VAB
  • Community annotation for 2VAB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 2VAB from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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