2VAZ Translation date Sep 05, 2007
title Model Of The S15-Mrna Complex Fitted Into The Cryo-Em Map Of Entrapment Complex.
authors S.Marzi, A.G.Myasnikov, A.Serganov, C.Ehresmann, P.Romby, M.Yusup B.P.Klaholz
compound source
Molecule: Rpso Mrna Operator
Chain: A
Fragment: Hairpin Loop Domain I And Pseudoknot
Engineered: Yes
Synthetic: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: 30s Ribosomal Protein S15
Chain: F
Synonym: Repressor S15
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet11c
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 10.00 Å
Gene
Ontology
ChainFunctionProcessComponent
F
  • mRNA binding involved in pos...


  • Primary referenceStructured mRNAs Regulate Translation Initiation by Binding to the Platform of the Ribosome., Marzi S, Myasnikov AG, Serganov A, Ehresmann C, Romby P, Yusupov M, Klaholz BP, Cell. 2007 Sep 21;130(6):1019-1031. PMID:17889647
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (7 Kb) [Save to disk]
  • Biological Unit Coordinates (2vaz.pdb1.gz) 4 Kb
  • CSU: Contacts of Structural Units for 2VAZ
  • Likely Quarternary Molecular Structure file(s) for 2VAZ
  • Retrieve 2VAZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VAZ from S2C, [Save to disk]
  • View 2VAZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VAZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VAZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vaz_A] [2vaz] [2vaz_F]
  • SWISS-PROT database: [P0ADZ4]
  • Domain organization of [RS15_ECOLI] by SWISSPFAM
  • Domain found in 2VAZ: [Ribosomal_S15 ] by SMART
  • Other resources with information on 2VAZ
  • Community annotation for 2VAZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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