2VBL	Hydrolase	date	Sep 14, 2007
title	Molecular Basis Of Human Xpc Gene Recognition And Cleavage B Engineered Homing Endonuclease Heterodimers
authors	P.Redondo, J.Prieto, I.G.Munoz, A.Alibes, F.Stricher, L.Serrano, S C.Perez, J.P.Cabaniols, P.Duchateau, F.Paques, F.J.Blanco, G.Mon
compound		source
Molecule: Dna Endonuclease I-Crei Chain: A Fragment: Residues 1-153 Synonym: Amel3-4-Mg, 23s Rrna Intron Protein Ec: 3.1.-.- Engineered: Yes		Organism_scientific: Chlamydomonas Reinhardtii Organism_taxid: 3055 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta Expression_system_variant: D3plyss Expression_system_plasmid: Cdfduet-1 Other_details: Amel4 Strep-Tag C-Term Amel3 His-Tag C-Term
Molecule: Dna Endonuclease I-Crei Chain: B Fragment: Residues 1-153 Synonym: Amel3-4-Mg, 23s Rrna Intron Protein Ec: 3.1.-.- Engineered: Yes		Organism_scientific: Chlamydomonas Reinhardtii Organism_taxid: 3055 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta Expression_system_variant: D3plyss Expression_system_plasmid: Cdfduet-1 Other_details: Amel4 Strep-Tag C-Term Amel3 His-Tag C-Term
Molecule: 5'-D(Dtdcdtdgdcdcdtdtdtdtdtdt Dgpda Chain: C Engineered: Yes		Synthetic: Yes
Molecule: 5'-D(Dtdtdadgdgdadtdcdcdtdtdc Dapda Chain: E Engineered: Yes		Synthetic: Yes
Molecule: 5'-D(Dadadadadgdgdcdadgdap)-3' Chain: S Engineered: Yes		Synthetic: Yes
Molecule: 5'-D(Dadgdgdadtdcdcdtdadap)-3' Chain: T Engineered: Yes		Synthetic: Yes
symmetry	Space Group: P 1 21 1	R_factor 0.147 R_Free 0.197
crystal cell	length a length b length c angle alpha angle beta angle gamma 44.612 69.209 88.671 90.00 95.46 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	MG	enzyme	Hydrolase E.C.3.1 BRENDA
Gene Ontology	Chain Function Process Component A, B nuclease activity endonuclease activity
Primary reference	Molecular basis of xeroderma pigmentosum group C DNA recognition by engineered meganucleases., Redondo P, Prieto J, Munoz IG, Alibes A, Stricher F, Serrano L, Cabaniols JP, Daboussi F, Arnould S, Perez C, Duchateau P, Paques F, Blanco FJ, Montoya G, Nature. 2008 Nov 6;456(7218):107-11. PMID:18987743

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (161 Kb) [Save to disk] Biological Unit Coordinates (2vbl.pdb1.gz) 154 Kb LPC: Ligand-Protein Contacts for 2VBL CSU: Contacts of Structural Units for 2VBL Likely Quarternary Molecular Structure file(s) for 2VBL Structure Factors (635 Kb) Retrieve 2VBL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VBL from S2C, [Save to disk] Re-refined 2vbl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VBL in 3D

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Visual 3D analysis of 2VBL

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VBL, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vbl_A] [2vbl_C] [2vbl_S] [2vbl_E] [2vbl_T] [2vbl_B] [2vbl] SWISS-PROT database: [P05725] Domain organization of [DNE1_CHLRE] by SWISSPFAM

Other resources with information on 2VBL

Community annotation for 2VBL at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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