2VCI Chaperone date Sep 24, 2007
title 4,5 Diaryl Isoxazole Hsp90 Chaperone Inhibitors: Potential Therapeutic Agents For The Treatment Of Cancer
authors P.A.Brough, W.Aherne, X.Barril, J.Borgognoni, K.Boxal, J.E.Cansfield, K.M.Cheung, I.Collins, N.G.M.Davies, M.J.Drysdale, B.Dymock, S.A.Eccles, H.Finch, A.Fink, A.Hayes, R.Howes, R.E.Hubbard, K.James, A.M.Jordan, A.Lockie, V.Martins, A.Massey, T.P.Matthews, E.Mcdonald, C.J.Northfield, L.H.Pearl, C.Prodromou, S.Ray, F.I.Raynaud, S.D.Roughley, S.Y.Sharp, A.Surgenor, D.L.Walmsley, P.Webb, M.Wood, P.Workman, L.Wright
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A
Fragment: N-Terminal Domain, Residues 1-236
Synonym: Hsp 86, Renal Carcinoma Antigen Ny-Ren-38
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Skin
Tissue: Melanoma
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 2 2 2
R_factor 0.207 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.144 88.454 99.025 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 2GJ BindingDB enzyme
Primary reference4,5-diarylisoxazole hsp90 chaperone inhibitors: potential therapeutic agents for the treatment of cancer., Brough PA, Aherne W, Barril X, Borgognoni J, Boxall K, Cansfield JE, Cheung KM, Collins I, Davies NG, Drysdale MJ, Dymock B, Eccles SA, Finch H, Fink A, Hayes A, Howes R, Hubbard RE, James K, Jordan AM, Lockie A, Martins V, Massey A, Matthews TP, McDonald E, Northfield CJ, Pearl LH, Prodromou C, Ray S, Raynaud FI, Roughley SD, Sharp SY, Surgenor A, Walmsley DL, Webb P, Wood M, Workman P, Wright L, J Med Chem. 2008 Jan 24;51(2):196-218. Epub 2007 Nov 20. PMID:18020435
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (2vci.pdb1.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 2VCI
  • CSU: Contacts of Structural Units for 2VCI
  • Likely Quarternary Molecular Structure file(s) for 2VCI
  • Structure Factors (147 Kb)
  • Retrieve 2VCI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VCI from S2C, [Save to disk]
  • Re-refined 2vci structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VCI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VCI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2VCI, from MSDmotif at EBI
  • Fold representative 2vci from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vci] [2vci_A]
  • SWISS-PROT database: [P07900]
  • Domain organization of [HS90A_HUMAN] by SWISSPFAM
  • Domain found in 2VCI: [HATPase_c ] by SMART
  • Alignments of the sequence of 2VCI with the sequences similar proteins can be viewed for 2VCI's classification [HS90A_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [HS90A_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2VCI
  • Community annotation for 2VCI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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