2VD7 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand NI, PD2, ZN BindingDB enzyme
Primary referenceInhibitor scaffolds for 2-oxoglutarate-dependent histone lysine demethylases., Rose NR, Ng SS, Mecinovic J, Lienard BM, Bello SH, Sun Z, McDonough MA, Oppermann U, Schofield CJ, J Med Chem. 2008 Nov 27;51(22):7053-6. doi: 10.1021/jm800936s. PMID:18942826
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk]
  • Biological Unit Coordinates (2vd7.pdb1.gz) 60 Kb
  • Biological Unit Coordinates (2vd7.pdb2.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 2VD7
  • CSU: Contacts of Structural Units for 2VD7
  • Likely Quarternary Molecular Structure file(s) for 2VD7
  • Structure Factors (319 Kb)
  • Retrieve 2VD7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VD7 from S2C, [Save to disk]
  • Re-refined 2vd7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2VD7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vd7] [2vd7_A] [2vd7_B]
  • SWISS-PROT database: [O75164]
  • Domains found in 2VD7: [JmjC] [JmjN ] by SMART

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