2VDC date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand AKG, F3S, FAD, FMN, OMT, SF4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, E, C, B, A, D


I, J, L, G, H, K


Primary referenceThe subnanometer resolution structure of the glutamate synthase 1.2-MDa hexamer by cryoelectron microscopy and its oligomerization behavior in solution: functional implications., Cottevieille M, Larquet E, Jonic S, Petoukhov MV, Caprini G, Paravisi S, Svergun DI, Vanoni MA, Boisset N, J Biol Chem. 2008 Mar 28;283(13):8237-49. Epub 2008 Jan 16. PMID:18199747
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1603 Kb) [Save to disk]
  • Biological Unit Coordinates (2vdc.pdb1.gz) 1589 Kb
  • LPC: Ligand-Protein Contacts for 2VDC
  • CSU: Contacts of Structural Units for 2VDC
  • Likely Quarternary Molecular Structure file(s) for 2VDC
  • Retrieve 2VDC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VDC from S2C, [Save to disk]
  • View 2VDC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vdc_B] [2vdc] [2vdc_A] [2vdc_C] [2vdc_D] [2vdc_E] [2vdc_F] [2vdc_G] [2vdc_H] [2vdc_I] [2vdc_J] [2vdc_K] [2vdc_L]
  • SWISS-PROT database: [Q05755] [Q05756]

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