2VE7 Cell Cycle date Oct 17, 2007
title Crystal Structure Of A Bonsai Version Of The Human Ndc80 Com
authors C.Ciferri, S.Pasqualato, G.Dos Reis, E.Screpanti, A.Maiolica, J.P J.G.De Luca, P.De Wulf, M.Salek, J.Rappsilber, C.A.Moores, E.D.S A.Musacchio
compound source
Molecule: Kinetochore Protein Hec1, Kinetochore Protein Spc
Chain: A, B
Fragment: Chimera Of Ndc80 Residues 80-286 With Spc25 Resid 224;
Synonym: Ndc80-Spc25 Chimera, Hshec1, Kinetochore-Associate 2, Highly Expressed In Cancer Protein, Retinoblastoma-Assoc Protein Hec, Hspc25;
Engineered: Yes
Other_details: Peptide Link Between Resi 286 And Resi 1118
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Pgex6p-2rbs

Molecule: Kinetochore Protein Nuf2, Kinetochore Protein Spc
Chain: C, D
Fragment: Chimera Of Nuf2 Residues 1-169 With Spc24 Residue
Synonym: Nuf2-Spc24 Chimera, Hnuf2, Hnuf2r, Hsnuf2, Cell Di Cycle-Associated Protein 1, Hspc24;
Engineered: Yes
Mutation: Yes
Other_details: Peptide Link Between Resi 169 And Resi 1122

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Pgex6p-2rbs
symmetry Space Group: P 21 21 2
R_factor 0.232 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
157.653 248.965 58.250 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.88 Å
ligand GOL, IPH enzyme
note 2VE7 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C


Primary referenceImplications for kinetochore-microtubule attachment from the structure of an engineered Ndc80 complex., Ciferri C, Pasqualato S, Screpanti E, Varetti G, Santaguida S, Dos Reis G, Maiolica A, Polka J, De Luca JG, De Wulf P, Salek M, Rappsilber J, Moores CA, Salmon ED, Musacchio A, Cell. 2008 May 2;133(3):427-39. PMID:18455984
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (179 Kb) [Save to disk]
  • Biological Unit Coordinates (2ve7.pdb1.gz) 80 Kb
  • Biological Unit Coordinates (2ve7.pdb2.gz) 93 Kb
  • LPC: Ligand-Protein Contacts for 2VE7
  • CSU: Contacts of Structural Units for 2VE7
  • Likely Quarternary Molecular Structure file(s) for 2VE7
  • Structure Factors (405 Kb)
  • Retrieve 2VE7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VE7 from S2C, [Save to disk]
  • Re-refined 2ve7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VE7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VE7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2VE7, from MSDmotif at EBI
  • Fold representative 2ve7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ve7] [2ve7_A] [2ve7_C] [2ve7_B] [2ve7_D]
  • SWISS-PROT database: [O14777] [Q9BZD4] [Q8NBT2] [Q9HBM1]
  • Domain organization of [NDC80_HUMAN] [NUF2_HUMAN] [SPC24_HUMAN] [SPC25_HUMAN] by SWISSPFAM
  • Other resources with information on 2VE7
  • Community annotation for 2VE7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science