2VES Hydrolase date Oct 26, 2007
title Crystal Structure Of Lpxc From Pseudomonas Aeruginosa Comple The Potent Bb-78485 Inhibitor
authors I.Mochalkin, J.D.Knafels
compound source
Molecule: Udp-3-O-Acyl-N-Acetylglucosamine Deacetylase
Chain: A, B, C
Fragment: Residues 1-299
Synonym: Udp-3-O-Acyl-Glcnac Deacetylase,Udp-3-O-[R-3- Hydroxymyristoyl]-N-Acetylglucosamine Deacetylase;
Engineered: Yes
Mutation: Yes
Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 208964
Strain: 287
Gene: Lpxc, Enva, Pa4406
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.177 R_Free 0.221
length a length b length c angle alpha angle beta angle gamma
90.542 103.331 105.284 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand GVR, SO4, ZN enzyme Hydrolase E.C. BRENDA
A, C, B

Primary referenceCrystal structure of LpxC from Pseudomonas aeruginosa complexed with the potent BB-78485 inhibitor., Mochalkin I, Knafels JD, Lightle S, Protein Sci. 2008 Mar;17(3):450-7. PMID:18287278
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (173 Kb) [Save to disk]
  • Biological Unit Coordinates (2ves.pdb1.gz) 166 Kb
  • LPC: Ligand-Protein Contacts for 2VES
  • CSU: Contacts of Structural Units for 2VES
  • Likely Quarternary Molecular Structure file(s) for 2VES
  • Structure Factors (1063 Kb)
  • Retrieve 2VES in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VES from S2C, [Save to disk]
  • Re-refined 2ves structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VES in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VES
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2VES, from MSDmotif at EBI
  • Fold representative 2ves from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ves_B] [2ves] [2ves_C] [2ves_A]
  • SWISS-PROT database: [P47205]
  • Domain organization of [LPXC_PSEAE] by SWISSPFAM
  • Other resources with information on 2VES
  • Community annotation for 2VES at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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