2VGD		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	FX3, GOL, NA, XYP	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Understanding the Structural Basis for Substrate and Inhibitor Recognition in Eukaryotic GH11 Xylanases., Vardakou M, Dumon C, Murray JW, Christakopoulos P, Weiner DP, Juge N, Lewis RJ, Gilbert HJ, Flint JE, J Mol Biol. 2007 Nov 12;. PMID:18078955

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk] Biological Unit Coordinates (2vgd.pdb1.gz) 37 Kb LPC: Ligand-Protein Contacts for 2VGD CSU: Contacts of Structural Units for 2VGD Likely Quarternary Molecular Structure file(s) for 2VGD Structure Factors (383 Kb) Retrieve 2VGD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VGD from S2C, [Save to disk] Re-refined 2vgd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VGD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vgd_A] [2vgd] SWISS-PROT database:

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