2VGH Growth Factor date Dec 17, 1997
title Heparin-Binding Domain From Vascular Endothelial Growth Factor, Nmr, Minimized Average Structure
authors W.J.Fairbrother, M.A.Champe, H.W.Christinger, B.A.Keyt, M.A.Starovasnik
compound source
Molecule: Vascular Endothelial Growth Factor-165
Chain: A
Fragment: Heparin-Binding Domain
Synonym: Vegf-165
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
note 2VGH is a representative structure
Primary referenceSolution structure of the heparin-binding domain of vascular endothelial growth factor., Fairbrother WJ, Champe MA, Christinger HW, Keyt BA, Starovasnik MA, Structure 1998 May 15;6(5):637-48. PMID:9634701
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2VGH
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 2VGH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VGH from S2C, [Save to disk]
  • View 2VGH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VGH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2VGH, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2vgh__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 2vgh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vgh_A] [2vgh]
  • SWISS-PROT database: [P15692]
  • Domain organization of [VEGFA_HUMAN] by SWISSPFAM
  • Other resources with information on 2VGH
  • Community annotation for 2VGH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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