2VGZ Transferase date Nov 16, 2007
title Crystal Structure Of Human Kynurenine Aminotransferase II
authors F.Rossi, S.Garavaglia, V.Montalbano, M.A.Walsh, M.Rizzi
compound source
Molecule: Kynureninealpha-Aminoadipate Aminotransferase
Chain: A, B
Fragment: Residues 2-425
Synonym: Kynurenine Aminotransferase II, Kataadat, Kynurenine--Oxoglutarate Transaminase II, Kynurenine--Oxog Aminotransferase II, 2-Aminoadipate Transaminase, 2-Aminoa Aminotransferase, Alpha-Aminoadipate Aminotransferase, Aad
Ec: 2.6.1.39, 2.6.1.7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet16b
symmetry Space Group: P 21 21 2
R_factor 0.182 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.631 154.956 61.201 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.3 Å
ligand IOD, PLP enzyme Transferase E.C.2.6.1.39 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • kynurenine-oxoglutarate tran...


  • Primary referenceCrystal Structure of Human Kynurenine Aminotransferase II, a Drug Target for the Treatment of Schizophrenia., Rossi F, Garavaglia S, Montalbano V, Walsh MA, Rizzi M, J Biol Chem. 2008 Feb 8;283(6):3559-66. Epub 2007 Dec 5. PMID:18056996
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (2vgz.pdb1.gz) 139 Kb
  • LPC: Ligand-Protein Contacts for 2VGZ
  • CSU: Contacts of Structural Units for 2VGZ
  • Likely Quarternary Molecular Structure file(s) for 2VGZ
  • Structure Factors (415 Kb)
  • Retrieve 2VGZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VGZ from S2C, [Save to disk]
  • Re-refined 2vgz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VGZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VGZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2VGZ, from MSDmotif at EBI
  • Fold representative 2vgz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vgz_B] [2vgz] [2vgz_A]
  • SWISS-PROT database: [Q8N5Z0]
  • Domain organization of [AADAT_HUMAN] by SWISSPFAM
  • Other resources with information on 2VGZ
  • Community annotation for 2VGZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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