2VH7 Hydrolase date Nov 19, 2007
title Crystal Structure Of Human Common-Type Acylphosphatase
authors R.C.Y.Yeung, Y.Lam, K.B.Wong
compound source
Molecule: Acylphosphatase-1
Chain: A
Synonym: Acylphosphate Phosphohydrolase 1, Acylphosphatase, Common Type Isozyme, Erythrocyte Isozyme;
Ec: 3.6.1.7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.209 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.577 47.235 57.261 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand
enzyme Hydrolase E.C.3.6.1.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA rigidifying salt-bridge favors the activity of thermophilic enzyme at high temperatures at the expense of low-temperature activity., Lam SY, Yeung RC, Yu TH, Sze KH, Wong KB, PLoS Biol. 2011 Mar;9(3):e1001027. Epub 2011 Mar 15. PMID:21423654
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (22 Kb) [Save to disk]
  • Biological Unit Coordinates (2vh7.pdb1.gz) 18 Kb
  • CSU: Contacts of Structural Units for 2VH7
  • Likely Quarternary Molecular Structure file(s) for 2VH7
  • Retrieve 2VH7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VH7 from S2C, [Save to disk]
  • View 2VH7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VH7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VH7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vh7_A] [2vh7]
  • SWISS-PROT database: [P07311]
  • Domain organization of [ACYP1_HUMAN] by SWISSPFAM
  • Other resources with information on 2VH7
  • Community annotation for 2VH7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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